DNA Binding Motif

						

			
Accessions: NR1D2_2 (HT-SELEX2 May2017)

			
Names: NR1D2
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: kwwktrGGTyAgTrkGTyAk
Weblogo: 
PSSM: P0      A      C      G      T
01    363    174    467    652      k
02   1655    224    309   1142      w
03    610     10     95   1045      w
04    320    261    548    526      k
05    152    195    437   1655      t
06    738    121    917     62      r
07     36      1   1655    557      G
08     43      4   1655     56      G
09      5     92    470   1655      T
10     61   1655     23   2518      y
11   1655      0     29     91      A
12    236    299    865    255      g
13     69    128    191   1655      T
14    765     34    890     40      r
15     14      0   1655    797      k
16     40      4   1655     17      G
17    136    125    268   1655      T
18     32   1655    134    662      y
19   1655     18    554     94      A
20    390    278    457    530      k
Binding TFs: NR1D2 (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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