DNA Binding Motif

						

			
Accessions: 6n62_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor RpoD
Organisms: Escherichia coli
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA
Length: 4
Consensus: AAac
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     84      0      0     12      A
03     60     12     12     12      a
04     12     60     12     12      c
Binding TFs: 6n62_F (Sigma-70 factor, region 1.2, Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, non-essential region)
Binding Sites: 6n62_N
6n62_T
			
Publications: Braffman NR, Piscotta FJ, Hauver J, Campbell EA, Link AJ, Darst SA. Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin. Proc Natl Acad Sci U S A 116:1273-1278 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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