DNA Binding Motif

						

			
Accessions: 4iht_CD (3D-footprint 20231221)

			
Names: HTH-type transcriptional regulator BenM
Organisms: Acinetobacter baylyi, strain ATCC 33305 / BD413 / ADP1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of BenM_DBD/benA site 1 DNA Complex
Length: 16
Consensus: ATAcnnnnnnAGTaTT
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      5      9     13     69      T
03     96      0      0      0      A
04     17     48     18     13      c
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     74      0     21      1      A
12      0      0     96      0      G
13      0      1      0     95      T
14     57      9     13     17      a
15      0      0      0     96      T
16     12      1      1     82      T
Type: Heterodimer
Binding TFs: 4iht_C (Bacterial regulatory helix-turn-helix protein, lysR family)
4iht_D (Bacterial regulatory helix-turn-helix protein, lysR family)
Binding Sites: 4iht_G
4iht_H
			
Publications: Alanazi AM, Neidle EL, Momany C. The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators. Acta Crystallogr D Biol Crystallogr : (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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