DNA Binding Motif

						

			
Accessions: M0014 (AthalianaCistrome v4_May2016)

			
Names: ERF15.ampDAP, T09778;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 18
Consensus: mrcyryhwymGCCGCCry
Weblogo: 
PSSM: P0      A      C      G      T
01    161    213     79    147      m
02    156     98    224    122      r
03    105    262    102    131      c
04    127    238     74    161      y
05    172     96    205    127      r
06    112    229     82    177      y
07    163    213     28    196      h
08    167     50    140    243      w
09     48    244     85    223      y
10    306    278     16      0      m
11      0      0    599      1      G
12      0    600      0      0      C
13     60    539      0      1      C
14      6      0    594      0      G
15      3    577      0     20      C
16      1    599      0      0      C
17    253      8    235    104      r
18     36    241     47    276      y
Binding TFs: T09778 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.