DNA Binding Motif

						

			
Accessions: 4wwc_B (3D-footprint 20231221)

			
Names: HTH-type transcriptional repressor YvoA
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of full length YvoA in complex with palindromic operator DNA
Length: 15
Consensus: CrrnnnnnTAnACCa
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02     46      0     35     15      r
03     40      5     41     10      r
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09      0      0      0     96      T
10     96      0      0      0      A
11     24     24     24     24      n
12     80      5     10      1      A
13      0     96      0      0      C
14      0     96      0      0      C
15     60     16     10     10      a
Binding TFs: 4wwc_B (Bacterial regulatory proteins, gntR family, UTRA domain, DeoR-like helix-turn-helix domain)
Binding Sites: 4wwc_E / 4wwc_F
			
Publications: Fillenberg S.B, Grau F.C, Seidel G, Muller Y.A. Structural insight into operator dre-sites recognition and effector binding in the GntR/HutC transcription regulator NagR. Nucleic acids research 43:1283-96 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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