DNA Binding Motif

						

			
Accessions: RARG_methyl_5 (HT-SELEX2 May2017)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 9
Consensus: raGGTCRcg
Weblogo: 
PSSM: P0      A      C      G      T
01   1968    771   1581    849      r
02   3767    961   1402    202      a
03      0     95   5169    520      G
04      0      0   5169    328      G
05    305      0    400   5169      T
06      0   5169     52      0      C
07   5169      0   1774      0      R
08   2140   3081   1516   2088      c
09   1022    863   2768    516      g
Binding TFs: RARG (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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