DNA Binding Motif

						

			
Accessions: MA1914.1 (JASPAR 2024)

			
Names: Snail
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: mmmmvyrCACCTGyhmcmmm
Weblogo: 
PSSM: P0      A      C      G      T
01    268    287    229    216      m
02    261    310    223    205      m
03    261    310    215    214      m
04    267    278    234    221      m
05    273    251    252    223      v
06    214    263    171    352      y
07    295    193    421     92      r
08     36    921      7     35      C
09    981      9      6      5      A
10      6    982      6      6      C
11     15    914     22     50      C
12     30     10     11    949      T
13     21     16    922     40      G
14    208    424     97    271      y
15    264    335    138    263      h
16    266    343    197    193      m
17    245    340    209    206      c
18    251    319    205    225      m
19    255    316    209    220      m
20    268    306    208    217      m
Type: Heterodimer
Binding TFs: Q4H2S7 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q4H2S7
			
Publications: Nieto MA. The snail superfamily of zinc-finger transcription factors. Nat Rev Mol Cell Biol 3:155-66 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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