DNA Binding Motif

						

			
Accessions: RFX5_3 (HT-SELEX2 May2017)

			
Names: RFX5
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 19
Consensus: sGTTgCyAkGcGTTGCyak
Weblogo: 
PSSM: P0      A      C      G      T
01   3481  16005  11476   8463      s
02   1230    449  38921    316      G
03    513    745    809  38905      T
04   7167   6045    667  37033      T
05  12638    796  34346   4589      g
06   1469  34530   2859   9496      C
07    341  11952   2552  26600      y
08  30070    958   7957   3409      A
09   7332   7223  10261  14609      k
10   3174   5227  29684   1340      G
11    808  22239   9613   6765      c
12   1633      0  38866     67      G
13    128    138    135  39325      T
14   3548   3129    114  38346      T
15  10023    530  34865   3534      G
16    558  35109   1338   8863      C
17    577  14712   3133  23420      y
18  27360   1990  10157   3675      a
19   6811   6739  11755  14119      k
Binding TFs: RFX5 (RFX DNA-binding domain, Poxvirus D5 protein-like)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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