DNA Binding Motif

						

			
Accessions: 4s04_B (3D-footprint 20231221)

			
Names: DNA-binding transcriptional regulator BasR
Organisms: Klebsiella pneumoniae JM45
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA box DNA
Length: 8
Consensus: TAAGCAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03     73      7      7      9      A
04      0      0     96      0      G
05      9     73      7      7      C
06     75      7      7      7      A
07     73      7      7      9      A
08      0      0     96      0      G
Binding TFs: 4s04_B (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: 4s04_H
4s04_C
4s04_D
			
Publications: Lou YC, Weng TH, Li YC, Kao YF, Lin WF, Peng HL, Chou SH, Hsiao CD, Chen C. Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA. Nat Commun : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.