DNA Binding Motif

						

			
Accessions: EEAD0512 (EEADannot 2025-07-22)

			
Names: TCP11_B73_1_m1
Organisms: Zea mays
Libraries: EEADannot 2025-07-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 15
Consensus: mcryGyGGGsCCCGk
Weblogo: 
PSSM: P0      A      C      G      T
01  0.386  0.295  0.207  0.112      m
02  0.111  0.565  0.135  0.189      c
03  0.278  0.126  0.479  0.117      r
04  0.097  0.342  0.180  0.381      y
05  0.210  0.052  0.738  0.000      G
06  0.001  0.295  0.207  0.497      y
07  0.000  0.000  0.999  0.001      G
08  0.000  0.000  1.000  0.000      G
09  0.001  0.000  0.999  0.000      G
10  0.007  0.455  0.385  0.153      s
11  0.000  0.977  0.000  0.023      C
12  0.002  0.993  0.002  0.003      C
13  0.006  0.748  0.239  0.007      C
14  0.099  0.050  0.809  0.042      G
15  0.115  0.212  0.268  0.405      k
Binding TFs: TCP11 (TCP family transcription factor)
			
Publications: Galli M, Chen Z, Ghandour T, Chaudhry A, Gregory J, Feng F, Li M, Schleif N, Zhang X, Dong Y, Song G, Walley JW, Chuck G, Whipple C, Kaeppler HF, Huang SC, Gallavotti A. Transcription factor binding divergence drives transcriptional and phenotypic variation in maize. Nat Plants 11:1205-1219 (2025). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.