DNA Binding Motif

						

			
Accessions: 1u8r_B (3D-footprint 20231221)

			
Names: Iron-dependent repressor ideR
Organisms: Mycobacterium tuberculosis, strain ATCC 25618 / H37Rv
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of an IdeR-DNA Complex Reveals a Conformational Change in Activated IdeR for Base-specific Interactions
Length: 6
Consensus: CCcTaA
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0     96      0      0      C
03     17     45     17     17      c
04      0      0      0     96      T
05     54     17     17      8      a
06     78      8      0     10      A
Binding TFs: 1u8r_B (Iron dependent repressor, N-terminal DNA binding domain, Iron dependent repressor, metal binding and dimerisation domain, FeoA domain, Winged helix DNA-binding domain)
Binding Sites: 1u8r_E
1u8r_F
			
Publications: Wisedchaisri G, Holmes R.K, Hol W.G. Crystal structure of an IdeR-DNA complex reveals a conformational change in activated IdeR for base-specific interactions. Journal of molecular biology 342:1155-69 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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