DNA Binding Motif

						

			
Accessions: POU5F1_methyl_2 (HT-SELEX2 May2017)

			
Names: POU5F1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 15
Consensus: rTTAATTATGCGyrw
Weblogo: 
PSSM: P0      A      C      G      T
01   2817   1023   2025    609      r
02    383   1603    239   4872      T
03    377    100     37   6474      T
04   6474     54     76    205      A
05   6474     43    200    120      A
06    619     69    232   6474      T
07     20      5      6   6474      T
08   6474      0      8      8      A
09    154     36    159   6474      T
10      4      3   6474    758      G
11      2   6474      4     18      C
12    753     11   6474    288      G
13   1136   2569    769   2000      y
14   3748    530   2726    375      r
15   2232    987   1612   1645      w
Binding TFs: POU5F1 (Homeobox domain, Pou domain - N-terminal to homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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