DNA Binding Motif
| Accessions: | 5zjs_B (3D-footprint 20231221) |
| Names: | Homeobox protein extradenticle |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence |
| Length: | 4 |
| Consensus: | atGA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 57 13 13 13 a 02 16 13 13 54 t 03 0 0 96 0 G 04 96 0 0 0 A |
| Binding TFs: | 5zjs_B (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | 5zjs_C 5zjs_D |
| Publications: | Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS. Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep 24:2221-2230 (2018). [Pubmed] |
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