DNA Binding Motif

						

			
Accessions: 4ihw_AB (3D-footprint 20231221)

			
Names: DNA-binding protein fis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27 bp Inosine substituted DNA F28-dI (AAATTTGTTTGAICITTGAGCAAATTT)
Length: 17
Consensus: TGtnngnnnnnTrnnCA
Weblogo: 
PSSM: P0      A      C      G      T
01      3      5      3     85      T
02      0      0     96      0      G
03      9     13     13     61      t
04     24     24     24     24      n
05     24     24     24     24      n
06     13     15     58     10      g
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      0      0      0     96      T
13     37      3     51      5      r
14     24     24     24     24      n
15     24     24     24     24      n
16      0     96      0      0      C
17     82      3      6      5      A
Type: Heterodimer
Binding TFs: 4ihw_A (Bacterial regulatory protein, Fis family)
4ihw_B (Bacterial regulatory protein, Fis family)
Binding Sites: 4ihw_C
4ihw_D
			
Publications: Hancock S.P, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson R.C. Control of DNA minor groove width and Fis protein binding by the purine 2-amino group. Nucleic acids research 41:6750-60 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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