DNA Binding Motif
| Accessions: | MA0499.2 (JASPAR 2024) |
| Names: | MYOD1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 13 |
| Consensus: | cwgCACCTGTymy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7175 11279 8118 7728 c 02 9462 7103 8444 9291 w 03 4549 5622 21884 2245 g 04 349 33328 354 269 C 05 32281 583 849 587 A 06 463 25275 7336 1226 C 07 534 32504 932 330 C 08 241 563 366 33130 T 09 208 386 33468 238 G 10 402 2555 1699 29644 T 11 1808 19052 4440 9000 y 12 9462 10485 6202 8151 m 13 5687 11760 7495 9358 y |
| Type: | Heterodimer |
| Binding TFs: | P15172 (Helix-loop-helix DNA-binding domain, Myogenic Basic domain, Myogenic determination factor 5) P15172 |
| Binding Sites: | MA0499.2.1 MA0499.2.10 / MA0499.2.5 MA0499.2.11 / MA0499.2.6 MA0499.2.12 MA0499.2.13 / MA0499.2.7 MA0499.2.14 / MA0499.2.8 MA0499.2.15 / MA0499.2.9 MA0499.2.16 MA0499.2.17 MA0499.2.13 / MA0499.2.18 MA0499.2.14 / MA0499.2.19 MA0499.2.2 MA0499.2.20 MA0499.2.1 / MA0499.2.3 MA0499.2.4 MA0499.2.5 MA0499.2.2 / MA0499.2.6 MA0499.2.3 / MA0499.2.7 MA0499.2.8 MA0499.2.4 / MA0499.2.9 MA0499.2.16 MA0499.2.10 MA0499.2.11 MA0499.2.12 MA0499.2.15 MA0499.2.17 MA0499.2.18 MA0499.2.19 MA0499.2.20 |
| Publications: | Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez G.J, Parker M.H, MacQuarrie K.L, Davison J, Morgan M.T, Ruzzo W.L, Gentleman R.C, Tapscott S.J. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Developmental cell 18:662-74 (2010). [Pubmed] |
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