DNA Binding Motif

						

			
Accessions: FOXA1_methyl_1 (HT-SELEX2 May2017)

			
Names: FOXA1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 12
Consensus: ywrwGymAAyAw
Weblogo: 
PSSM: P0      A      C      G      T
01     59    119     76    139      y
02    166     33     42    226      w
03    205      4    187     55      r
04    308     76    135    392      w
05     38     20    392     14      G
06     23    156     14    392      y
07    392    299      4     18      m
08    344     48      0      9      A
09    392      0     11      0      A
10      5    204      0    188      y
11    392      1     39      0      A
12    121     24     14    234      w
Binding TFs: FOXA1 (Fork head domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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