DNA Binding Motif

						

			
Accessions: SRY_DBD_1 (HumanTF 1.0)

			
Names: SRY
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3; Possible binding to single stranded DNA
Length: 15
Consensus: AACAATAmCATTGTT
Weblogo: 
PSSM: P0      A      C      G      T
01   5235    164    108    172      A
02   5235     26     15     22      A
03      2   5235      2      7      C
04   5235     10      2     60      A
05   5235    133      3     19      A
06      4      7      4   5235      T
07   5235    124   1261    294      A
08   1951   1469    805   1010      m
09     35   5235     13     29      C
10   5235      3      1      2      A
11      3      4      4   5235      T
12      3      1      6   5235      T
13      9      2   5235      4      G
14      9      6      7   5235      T
15     52     70     26   5235      T
Binding TFs: SRY_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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