DNA Binding Motif

						

			
Accessions: 2i13_A (3D-footprint 20231221)

			
Names: Aart
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Aart, a six finger zinc finger designed to recognize ANN triplets
Length: 18
Consensus: CCCGGGCTTTTCCCTACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0     96      0      0      C
03      0     96      0      0      C
04      0      0     96      0      G
05      9      0     76     11      G
06     11      9     67      9      G
07      0     96      0      0      C
08      0      0      0     96      T
09      0      0      0     96      T
10      0      0      0     96      T
11      0      0      0     96      T
12      0     96      0      0      C
13      0     96      0      0      C
14      0     96      0      0      C
15      0      0      0     96      T
16     86     10      0      0      A
17      0     96      0      0      C
18     69      9      9      9      A
Binding TFs: 2i13_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: 2i13_C
2i13_D
			
Publications: Segal D.J, Crotty J.W, Bhakta M.S, Barbas C.F, Horton N.C. Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA. Journal of molecular biology 363:405-21 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.