DNA Binding Motif

						

			
Accessions: 5l0m_A (3D-footprint 20231221)

			
Names: Nuclear receptor subfamily 5 group A member 2
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: hLRH-1 DNA Binding Domain - 12bp Oct4 promoter complex
Length: 9
Consensus: TAnCCTtGa
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     72      8      8      8      A
03     24     24     24     24      n
04      0     96      0      0      C
05      0     96      0      0      C
06      0      0      0     96      T
07      8     16     16     56      t
08      0      0     96      0      G
09     64     16     16      0      a
Binding TFs: 5l0m_A (Zinc finger, C4 type (two domains))
Binding Sites: 5l0m_B
5l0m_C
			
Publications: Weikum ER, Tuntland ML, Murphy MN, Ortlund EA. A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). J Mol Biol : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.