DNA Binding Motif

						

			
Accessions: HOXD12_ETV1_1 (HumanTF2 1.0)

			
Names: HOXD12_ETV1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: rcCGGAAGTAATAAAm
Weblogo: 
PSSM: P0      A      C      G      T
01   1119     48    748    167      r
02    150   1388    478     58      c
03     19   1866      7      0      C
04      9      0   1866      0      G
05      0      0   1866      0      G
06   1866      0      0     16      A
07   1866      0     18     58      A
08    101     12   1866      0      G
09      5    293     13   1866      T
10   1866    459     95     31      A
11   1866     15    397      4      A
12      5      4      0   1866      T
13   1866     13      5    338      A
14   1866      0      0      9      A
15   1866     47     30      8      A
16    858    703    276     29      m
Type: Heterodimer
Binding TFs: ETV1_TF2 (Ets-domain)
HOXD12_TF1 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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