DNA Binding Motif

						

			
Accessions: HOXB13_TBX21_2 (HumanTF2 1.0)

			
Names: HOXB13_TBX21
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 16
Consensus: ArGTGtkAmcwATAAA
Weblogo: 
PSSM: P0      A      C      G      T
01    684      0    135    115      A
02    226      4    458      7      r
03     52     54    684     17      G
04     71      0    111    684      T
05     48      0    684     17      G
06    138     98     41    407      t
07     70     93    342    179      k
08    497      0    172     25      A
09    237    212     90    145      m
10     79    397     51    157      c
11    314    117      4    250      w
12    684      0      0     18      A
13      5      0     13    684      T
14    684     17     39     19      A
15    684     21     56      0      A
16    684     13      0     51      A
Type: Heterodimer
Binding TFs: HOXB13_TF1 / HOXB13_TF2 (Homeobox domain)
TBX21_TF2 (T-box)
HOXB13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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