DNA Binding Motif

						

			
Accessions: MA0278.1 (JASPAR 2024)

			
Names: BAS1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 21
Consensus: kcwyrgCCvGAGTCArdwyra
Weblogo: 
PSSM: P0      A      C      G      T
01     64    217    425    292      k
02    104    552    150    192      c
03    484    111    114    288      w
04     78    401    186    333      y
05    455     51    370    122      r
06    248     34    670     46      g
07     98    724    143     33      C
08     52    918      7     20      C
09    348    346    280     24      v
10     12      3    977      6      G
11    966      5     23      4      A
12     26      6    962      4      G
13      9     10      4    975      T
14     47    930      7     15      C
15    892     42     16     49      A
16    487    123    320     68      r
17    288    140    317    254      d
18    373    110     81    434      w
19    178    367    184    268      y
20    402    140    341    114      r
21    435    229    241     94      a
Type: Heterodimer
Binding TFs: P22035 (Myb-like DNA-binding domain, Myb-like DNA-binding domain)
P22035
			
Publications: Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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