DNA Binding Motif

						

			
Accessions: UP00519A_1 (UniPROBE 20160601)

			
Names: D.mel FoxN1/4, DOMINA protein, Jumeau, Winged-helix nude transcription factor, Winged-helix protein
Organisms: Drosophila melanogaster
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: agmwywragyGACGCgbmvtya
Weblogo: 
PSSM: P0      A      C      G      T
01   0.52   0.16   0.09   0.24      a
02   0.22   0.16   0.43   0.19      g
03   0.43   0.26   0.21   0.10      m
04   0.58   0.04   0.13   0.25      w
05   0.21   0.28   0.13   0.38      y
06   0.38   0.19   0.14   0.30      w
07   0.56   0.09   0.29   0.06      r
08   0.59   0.13   0.08   0.19      a
09   0.22   0.08   0.52   0.18      g
10   0.11   0.37   0.10   0.42      y
11   0.04   0.03   0.92   0.02      G
12   0.94   0.01   0.02   0.03      A
13   0.04   0.94      0   0.01      C
14   0.01      0   0.96   0.02      G
15   0.01   0.98      0   0.01      C
16   0.03   0.22   0.59   0.15      g
17   0.21   0.28   0.25   0.26      b
18   0.37   0.40   0.11   0.12      m
19   0.29   0.28   0.27   0.16      v
20   0.18   0.17   0.15   0.50      t
21   0.23   0.33   0.11   0.33      y
22   0.66   0.10   0.13   0.11      a
Binding TFs: UP00519A (Fork head domain)
Binding Sites: ACGCGTCA
ACGCGTCG
GACGCGTA
AAGCGTCA
ATCGCGTC
ATGACGCC
ATGACGCG
ATGGCGTC
CCGACGCG
CGACGCGC
CGACGCTA
CGCGTCGC
GACGCCGC
GACGCTAC
GCGACGCC
GCGTCATA
GGCGTCAC
TAGCGTCA
TCGCGTCA
TGACGCCA
			
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.