DNA Binding Motif

						

			
Accessions: HNF4A_full_3 (HumanTF 1.0)

			
Names: HNF4A
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 16
Consensus: rrGGTCAAAGTCCAhy
Weblogo: 
PSSM: P0      A      C      G      T
01  14045   7433  22343   3351      r
02  13892    428  22496    216      r
03     34     38  36388     45      G
04   3197    245  36388   9533      G
05    869   1228   8136  36388      T
06     39  36388     55    807      C
07  36388     26    556     16      A
08  36388     33     79     67      A
09  36388     42    540     34      A
10     40     43  36388     21      G
11     37     62     95  36388      T
12    494  36388    305   4452      C
13     50  36388     45    525      C
14  30205    181   6184    517      A
15  12371   9751   4817   9450      h
16   8592   9136   7397  11263      y
Binding TFs: HNF4A_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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