DNA Binding Motif

						

			
Accessions: HNF4A_DBD_1 (HumanTF 1.0)

			
Names: HNF4A
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4
Length: 16
Consensus: srGTcCAAAGTcCAwy
Weblogo: 
PSSM: P0      A      C      G      T
01    266    418    562    109      s
02    752     39    602     16      r
03     20      2   1355     72      G
04      4      2     18   1355      T
05    213   1355    399    171      c
06     40   1355      6     95      C
07   1355      0     42      6      A
08   1355      0     14     16      A
09   1355      0     50      0      A
10      0      0   1355      0      G
11      0      0      2   1355      T
12     85   1355    172    383      c
13      3   1355      0     42      C
14   1355     30    183    236      A
15    449    204     64    637      w
16     53    934      0    421      y
Binding TFs: HNF4A_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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