DNA Binding Motif

						

			
Accessions: PBX4_HOXA1 (HumanTF2 1.0)

			
Names: PBX4_HOXA1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 12
Consensus: vymATmAATCA-
Weblogo: 
PSSM: P0      A      C      G      T
01   1008    959   1252    430      v
02    441   1963    201   1685      y
03    929   1780    476    463      m
04   3648    199    336     87      A
05     14    242     57   3648      T
06   1502   2147     84    288      m
07   3648    859    381    167      A
08   3648    218    330    126      A
09     40    154     10   3648      T
10    104   3648     39    363      C
11   3648    600    376    671      A
12      0      0      0      0      -
Type: Heterodimer
Binding TFs: HOXA1_TF2 (Homeobox domain)
HOXA1_Full (Homeobox domain)
PBX4_TF1 (Homeobox domain, PBC domain, Homeobox KN domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.