DNA Binding Motif

						

			
Accessions: MA2035.2 (JASPAR 2024)

			
Names: NAC075
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 20
Consensus: GwAgCTTGtwswacAAGcTw
Weblogo: 
PSSM: P0      A      C      G      T
01    113     41    585     54      G
02    455     30     30    278      w
03    591     12     73    117      A
04    163     40    476    114      g
05     17    766      2      8      C
06      1      3    113    676      T
07      0      0      1    792      T
08     71    164    543     15      G
09    177     74     26    516      t
10    238    145    185    225      w
11    163    230    241    159      s
12    237    176    139    241      w
13    510     23     83    177      a
14     13    516    188     76      c
15    788      1      3      1      A
16    677    112      0      4      A
17      8      1    770     14      G
18    110    459     65    159      c
19    142     83     19    549      T
20    412     52     68    261      w
Type: Heterodimer
Binding TFs: Q9M0F8 (No apical meristem (NAM) protein)
Q9M0F8
Binding Sites: MA2035.2.1
MA2035.2.10
MA2035.2.11 / MA2035.2.9
MA2035.2.12
MA2035.2.13
MA2035.2.14
MA2035.2.15
MA2035.2.16
MA2035.2.17
MA2035.2.18
MA2035.2.19
MA2035.2.2
MA2035.2.20
MA2035.2.3
MA2035.2.4
MA2035.2.5
MA2035.2.6
MA2035.2.7
MA2035.2.8
			
Publications: Zhong R, Lee C, Ye ZH. Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis. Mol Plant 3:1087-103 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.