DNA Binding Motif

						

			
Accessions: MA1785.2 (JASPAR 2024)

			
Names: NAC018
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 10
Consensus: ayACGymAcy
Weblogo: 
PSSM: P0      A      C      G      T
01    591     76    145    189      a
02     29    609     98    264      y
03   1000      0      0      0      A
04      0   1000      0      0      C
05      0      0   1000      0      G
06     34    286    195    485      y
07    657    290      0     54      m
08    793      0      0    207      A
09     82    571    111    236      c
10     72    406     57    465      y
Type: Heterodimer
Binding TFs: Q9ZNU2 (No apical meristem (NAM) protein)
Q9ZNU2
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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