DNA Binding Motif

						

			
Accessions: 6erq_BGJ (3D-footprint 20231221)

			
Names: Transcription factor A, mitochondrial
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of the human mitochondrial transcription initiation complex at the HSP promoter
Length: 34
Consensus: GCTGCTnnnnnnnTACCCnnnnnnnnnnnnATAG
Weblogo: 
PSSM: P0      A      C      G      T
01      6      6     78      6      G
02      0     96      0      0      C
03      0      0      0     96      T
04      0      0     96      0      G
05      0     96      0      0      C
06      6      6      6     78      T
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     24     24     24     24      n
14      0      0      0     96      T
15     96      0      0      0      A
16      0     96      0      0      C
17      0     96      0      0      C
18      6     78      6      6      C
19     24     24     24     24      n
20     24     24     24     24      n
21     24     24     24     24      n
22     24     24     24     24      n
23     24     24     24     24      n
24     24     24     24     24      n
25     24     24     24     24      n
26     24     24     24     24      n
27     24     24     24     24      n
28     24     24     24     24      n
29     24     24     24     24      n
30     24     24     24     24      n
31     96      0      0      0      A
32      6      6      6     78      T
33     96      0      0      0      A
34      6      6     78      6      G
Binding TFs: 6erq_G (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 6erq_H
6erq_I
			
Publications: Hillen HS, Morozov YI, Sarfallah A, Temiakov D, Cramer P. Structural Basis of Mitochondrial Transcription Initiation. Cell 171:1072-1081 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.