DNA Binding Motif

						

			
Accessions: UN0356.1 (JASPAR 2024), MA2040.1 (JASPAR 2024)

			
Names: AT5G05550
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 13
Consensus: wtCTCCGGCGahr
Weblogo: 
PSSM: P0      A      C      G      T
01    845    280    463    710      w
02    482    390    327   1099      t
03     41   1863     43    351      C
04    160     13    328   1797      T
05     24   2244     15     15      C
06      7   2283      0      8      C
07     13      0   2281      4      G
08    105    119   2017     57      G
09     59   2038     10    191      C
10    128     68   2037     65      G
11   1363    208    428    299      a
12    597    641    377    683      h
13    707    289    796    506      r
Type: Heterodimer
Binding TFs: F4K0Q7 (Myb/SANT-like DNA-binding domain)
Q9FFG0 (Myb/SANT-like DNA-binding domain)
F4K0Q7
Binding Sites: UN0356.1.18
MA2040.1.10 / UN0356.1.19
MA2040.1.14
MA2040.1.16
MA2040.1.19
MA2040.1.20
UN0356.1.4
MA2040.1.2 / UN0356.1.5
MA2040.1.5 / UN0356.1.8
UN0356.1.9
MA2040.1.6 / UN0356.1.10
UN0356.1.11
MA2040.1.1 / UN0356.1.1
MA2040.1.7 / UN0356.1.12
MA2040.1.8 / UN0356.1.13
UN0356.1.14
UN0356.1.15
MA2040.1.9 / UN0356.1.16
UN0356.1.17
UN0356.1.2
MA2040.1.11 / UN0356.1.20
UN0356.1.3
MA2040.1.3 / UN0356.1.6
MA2040.1.4 / UN0356.1.7
MA2040.1.12
MA2040.1.13
MA2040.1.15
MA2040.1.17
MA2040.1.18
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.