DNA Binding Motif

						

			
Accessions: NFKB1 (SMILE-seq 1.0), Nfkb1 (SMILE-seq 1.0)

			
Names: NFKB1
Organisms: Homo sapiens
Libraries: SMILE-seq 1.0 1
1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]
Length: 13
Consensus: rGGkrmttyCCCy
Weblogo: 
PSSM: P0      A      C      G      T
01  0.279  0.219  0.329  0.174      r
02  0.028  0.035  0.909  0.029      G
03  0.004  0.005  0.981   0.01      G
04  0.015  0.011  0.649  0.325      k
05  0.386  0.012  0.485  0.118      r
06  0.303  0.307  0.188  0.202      m
07  0.172  0.073  0.081  0.674      t
08  0.059    0.2  0.136  0.606      t
09  0.085   0.52  0.021  0.375      y
10   0.18  0.776  0.007  0.037      C
11  0.011  0.979  0.004  0.006      C
12  0.069  0.834  0.053  0.045      C
13   0.15  0.319   0.24  0.292      y
Type: Heterodimer
Binding TFs: NFKB1 (Ankyrin repeat, Death domain, Rel homology domain (RHD), Ankyrin repeats (3 copies), Ankyrin repeat, Ankyrin repeats (many copies))
Nfkb1
			
Publications: Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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