DNA Binding Motif

						

			
Accessions: MA1616.2 (JASPAR 2024)

			
Names: Prdm15
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: gAAAACCTGGA
Weblogo: 
PSSM: P0      A      C      G      T
01    252    325   1333    327      g
02   2011     60    135     31      A
03   2121     34     58     24      A
04   1942     47    200     48      A
05   1801    138    152    146      A
06     67   1941    101    128      C
07    222   1886    107     22      C
08    220    361     28   1628      T
09     19      7   2199     12      G
10     64     23   2126     24      G
11   1531    314    220    172      A
Type: Heterodimer
Binding TFs: E9Q8T2 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
E9Q8T2
Binding Sites: MA1616.2.1 / MA1616.2.2
MA1616.2.10
MA1616.2.11 / MA1616.2.12
MA1616.2.13
MA1616.2.14
MA1616.2.15
MA1616.2.16
MA1616.2.17 / MA1616.2.3
MA1616.2.18
MA1616.2.19
MA1616.2.20
MA1616.2.4
MA1616.2.5
MA1616.2.6 / MA1616.2.8
MA1616.2.7
MA1616.2.9
			
Publications: Mzoughi S, Zhang J, Hequet D, Teo SX, Fang H, Xing QR, Bezzi M, Seah MKY, Ong SLM, Shin EM, Wollmann H, Wong ESM, Al-Haddawi M, Stewart CL, Tergaonkar V, Loh YH, Dunn NR, Messerschmidt DM, Guccione E. PRDM15 safeguards naive pluripotency by transcriptionally regulating WNT and MAPK-ERK signaling. Nat Genet 49:1354-1363 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.