DNA Binding Motif

						

			
Accessions: Pknox2_DBD (HumanTF 1.0)

			
Names: Pknox2
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4
Length: 12
Consensus: TGACAGsTGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    195    269     34  71306      T
02     30      6  80787      8      G
03  69258     23    137     87      A
04     26  68373     19     60      C
05  70040     18     85     27      A
06     59     25  77412   2985      G
07    841  17596  29853     15      s
08     22     64     34  73631      T
09     38      9  78359     18      G
10   1291    158     29  71647      T
11     36  70640     50     64      C
12  67902     77    254    243      A
Binding TFs: Pknox2_DBD (Homeobox domain, Homeobox KN domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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