DNA Binding Motif
| Accessions: | MA0570.3 (JASPAR 2024) |
| Names: | ABF1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 10 |
| Consensus: | aCACGTGkCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 593 284 60 204 a 02 83 793 124 141 C 03 1123 4 11 3 A 04 10 1099 15 17 C 05 16 9 1107 9 G 06 4 8 1 1128 T 07 9 3 1123 6 G 08 39 11 707 384 k 09 81 999 28 33 C 10 909 36 117 79 A |
| Type: | Heterodimer |
| Binding TFs: | Q9M7Q5 (bZIP transcription factor, Basic region leucine zipper) Q9M7Q5 |
| Binding Sites: | MA0570.3.1 / MA0570.3.10 / MA0570.3.15 / MA0570.3.2 / MA0570.3.20 / MA0570.3.3 MA0570.3.11 MA0570.3.12 MA0570.3.13 MA0570.3.14 MA0570.3.16 MA0570.3.17 MA0570.3.18 MA0570.3.19 MA0570.3.4 MA0570.3.5 MA0570.3.6 MA0570.3.7 MA0570.3.8 MA0570.3.9 |
| Publications: | Choi H., Hong J., Ha J., Kang J., Kim S. Y. ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem. 275:1723-1730 (2000). [Pubmed] |
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