DNA Binding Motif

						

			
Accessions: 1cgp_AB (3D-footprint 20231221)

			
Names: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP))
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 16
Consensus: TGTGACnnnnTTCACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      8      6      6     76      T
04      0      0     96      0      G
05     90      6      0      0      A
06      6     72      6     12      C
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      8      6     12     70      T
12      0      0      0     96      T
13      0     96      0      0      C
14     78      6      6      6      A
15      0     96      0      0      C
16     96      0      0      0      A
Binding TFs: 1cgp_A / 1cgp_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1cgp_E
1cgp_C
1cgp_F
			
Publications: Schultz SC., Shields GC., Steitz TA. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees. Science. 253(5023):1001-7 (1991). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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