DNA Binding Motif

						

			
Accessions: M0002 (AthalianaCistrome v4_May2016)

			
Names: T13669;, VRN1.DAP
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 29
Consensus: ttttTTTTTTTTTTTTTTTTTTTTTTkTy
Weblogo: 
PSSM: P0      A      C      G      T
01    113     61     59    342      t
02    102     76     43    354      t
03    114     59     38    364      t
04     43     47     98    387      t
05     67     59     10    439      T
06     48      5     39    483      T
07     10     52     22    491      T
08     23     18     18    516      T
09     35      0     23    517      T
10      9     15      0    551      T
11      0      0     14    561      T
12      6     15      0    554      T
13      6      4      5    560      T
14      2      4     10    559      T
15      8      0      8    559      T
16     10      5      0    560      T
17      0      7      0    568      T
18      0      8      0    567      T
19      0      2      4    569      T
20      2      0      6    567      T
21      0      0      0    575      T
22      0      3      0    572      T
23      0      0      0    575      T
24      4      0      2    568      T
25      0     17      5    553      T
26      3     10     36    526      T
27     33      0    191    351      k
28     70     17     94    394      T
29     83    207    133    151      y
Binding TFs: T13669 (B3 DNA binding domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.