DNA Binding Motif
| Accessions: | UP00313A_1 (UniPROBE 20160601) |
| Names: | BRY1, Peroxide sensitivity protein POS9, Skn7, Transcription factor SKN7, YHR206W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | scrvktwtGGCCawawswcct |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.34 0.25 0.17 s 02 0.21 0.51 0.22 0.06 c 03 0.44 0.09 0.40 0.07 r 04 0.25 0.31 0.32 0.12 v 05 0.14 0.11 0.31 0.44 k 06 0.24 0.11 0.11 0.55 t 07 0.46 0.20 0.07 0.27 w 08 0.03 0.13 0.22 0.62 t 09 0.15 0.15 0.69 0.02 G 10 0.05 0.05 0.88 0.02 G 11 0.02 0.88 0.05 0.05 C 12 0.02 0.69 0.15 0.15 C 13 0.62 0.22 0.13 0.03 a 14 0.26 0.08 0.22 0.44 w 15 0.55 0.11 0.11 0.24 a 16 0.31 0.16 0.20 0.32 w 17 0.18 0.36 0.26 0.21 s 18 0.26 0.08 0.11 0.55 w 19 0.10 0.51 0.24 0.15 c 20 0.20 0.36 0.23 0.20 c 21 0.18 0.17 0.18 0.47 t |
| Binding TFs: | UP00313A (Response regulator receiver domain, HSF-type DNA-binding) |
| Binding Sites: | AATCGCCA AATGGCCA AATGGCCG AGCCGGCC ATGGCCAA ATGGCCAT CATGGCCA GATGGCCA GCCGGCCC GGCCAAAA GGCCATAA GGCCATGA GGCCATTA GGCCGGCC GGGCCATA TATGGCCA TGGCCAAA AATTCGCC CTTGGCCA TCCGGCCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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