DNA Binding Motif

Accessions: MA2170.1 (JASPAR 2024)
Names: lin-32
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 8
Consensus: ACAGrTGk
Weblogo:
PSSM: P0 A C G T
01 353 40 91 5 A
02 4 463 15 7 C
03 467 5 11 6 A
04 2 7 455 25 G
05 285 49 150 5 r
06 7 11 8 463 T
07 1 1 485 2 G
08 9 22 311 147 k
Binding TFs: Q10574
Binding Sites: MA2170.1.11
MA2170.1.1
MA2170.1.8
MA2170.1.9
MA2170.1.3
MA2170.1.16 / MA2170.1.20 / MA2170.1.7
MA2170.1.12 / MA2170.1.15
MA2170.1.14
MA2170.1.5
MA2170.1.17 / MA2170.1.4
MA2170.1.10
MA2170.1.18 / MA2170.1.19
MA2170.1.13
MA2170.1.2
MA2170.1.6
Publications: Portman DS, Emmons SW. The basic helix-loop-helix transcription factors LIN-32 and HLH-2 function together in multiple steps of a C. elegans neuronal sublineage 127:5415-26 (Development.). [Pubmed]

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