DNA Binding Motif

						

			
Accessions: MA1165.3 (JASPAR 2024)

			
Names: HHO6
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 7
Consensus: AGATTCt
Weblogo: 
PSSM: P0      A      C      G      T
01  10221     76    107    191      A
02     19     32  10366    178      G
03  10410     52     58     75      A
04    435     16     17  10127      T
05    332     71    105  10087      T
06     50  10484     21     40      C
07   1638   1723    865   6369      t
Type: Heterodimer
Binding TFs: Q9FX84 (Myb-like DNA-binding domain)
Q9FX84
Binding Sites: MA1165.3.12
MA1165.3.16 / MA1165.3.3 / MA1165.3.8
MA1165.3.11
MA1165.3.1 / MA1165.3.10 / MA1165.3.13 / MA1165.3.14 / MA1165.3.15 / MA1165.3.17 / MA1165.3.18 / MA1165.3.4 / MA1165.3.6 / MA1165.3.9
MA1165.3.19 / MA1165.3.2
MA1165.3.20
MA1165.3.5 / MA1165.3.7
			
Publications: Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.