DNA Binding Motif

						

			
Accessions: MA1289.1 (JASPAR 2024), M0751 (AthalianaCistrome v4_May2016)

			
Names: TCP3, T01674;, TCP3.DAP
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: rtkGGGACCAChw
Weblogo: 
PSSM: P0      A      C      G      T
01    165     69    209    139      r
02    122     95     77    288      t
03     58     89    185    250      k
04      2      2    563     15      G
05      0      0    582      0      G
06      0      0    582      0      G
07    503     51      0     28      A
08      0    582      0      0      C
09      0    582      0      0      C
10    544      0     38      0      A
11      1    561      6     14      C
12    215    154     51    162      h
13    196     74    104    208      w
Type: Heterodimer
Binding TFs: Q9MAH8 / T01674 (TCP family transcription factor)
Q9MAH8
Binding Sites: MA1289.1.1 / MA1289.1.2 / MA1289.1.3 / MA1289.1.5
MA1289.1.10
MA1289.1.11
MA1289.1.12
MA1289.1.13
MA1289.1.14
MA1289.1.15
MA1289.1.16
MA1289.1.17
MA1289.1.18
MA1289.1.19
MA1289.1.20
MA1289.1.4
MA1289.1.6 / MA1289.1.8
MA1289.1.7
MA1289.1.9
			
Publications: Kosugi S., Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family.. Plant J. 30:337-348 (2002). [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.