DNA Binding Motif

						

			
Accessions: 1rio_ABH (3D-footprint 20231221)

			
Names: Repressor protein CI
Organisms: Enterobacteria phage lambda, Escherichia phage lambda, Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of bacteriophage lambda cI-NTD in complex with sigma-region4 of Thermus aquaticus bound to DNA
Length: 20
Consensus: TAnCACCGCnAGTACTTGAC
Weblogo: 
PSSM: P0      A      C      G      T
01      3      3      3     87      T
02     96      0      0      0      A
03     24     24     24     24      n
04      0     89      0      7      C
05     81      6      3      6      A
06      0     96      0      0      C
07      0     96      0      0      C
08      0      0     96      0      G
09      0     96      0      0      C
10     24     24     24     24      n
11     85      5      3      3      A
12      0      0     96      0      G
13      6      3      3     84      T
14     82      0     13      1      A
15      6     78      6      6      C
16      0      0      0     96      T
17      0      0      0     96      T
18      5      3     85      3      G
19     85      3      5      3      A
20      0     96      0      0      C
Type: Heterodimer
Binding TFs: 1rio_A (Helix-turn-helix)
1rio_B (Helix-turn-helix)
1rio_H (Sigma-70, region 4)
Binding Sites: 1rio_T
1rio_U
			
Publications: Jain D, Nickels B.E, Sun L, Hochschild A, Darst S.A. Structure of a ternary transcription activation complex. Molecular cell 13:45-53 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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