DNA Binding Motif

						

			
Accessions: GCM1_TBX21_2 (HumanTF2 1.0)

			
Names: GCM1_TBX21
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 28
Consensus: rgGTGtkAhyyhmhtkTmrCATrcGGGy
Weblogo: 
PSSM: P0      A      C      G      T
01   2260    365   1290   1181      r
02    932    657   2436    736      g
03    199     90   2703    335      G
04     38   1342    202   4535      T
05    130     46   2778     48      G
06    516   1215    334   3843      t
07    479   1141   1619   1545      k
08   2968    235    726    248      A
09   1281   1280    659   1112      h
10    931   1019    920   1191      y
11    880   1174    594   1775      y
12   1079   1236    772   1167      h
13   1135   1246    799   1033      m
14   1208   1113    828   1095      h
15   1046    841    837   1525      t
16    773    659   1072   1614      k
17    435    996    166   4436      T
18   1628   1607    619    661      m
19   1605    456   1161    687      r
20    259   5668    147    206      C
21   3462     69    722     20      A
22    214    521     78   4679      T
23   2290    127   1346     42      r
24    331   2998    521    933      c
25    665    107   2658    203      G
26     47    138   2678    148      G
27     11    155   2692    117      G
28    697   2209    251   1608      y
Type: Heterodimer
Binding TFs: GCM1_TF1 (GCM motif protein)
TBX21_TF2 (T-box)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.