DNA Binding Motif

						

			
Accessions: UN0466.1 (JASPAR 2024)

			
Names: Pou4
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: atwawthATAAATwawthat
Weblogo: 
PSSM: P0      A      C      G      T
01    304    248    207    241      a
02    238    219    193    350      t
03    293    242    214    251      w
04    374    227    183    217      a
05    271    209    157    363      w
06    248    181    189    381      t
07    345    285    114    256      h
08    879     38     31     53      A
09     31     16      9    944      T
10    685     53     93    168      A
11    881     54     20     45      A
12    844     20     23    114      A
13     45     26     16    913      T
14    387    146    184    284      w
15    499    153    114    235      a
16    261    159    164    417      w
17    243    183    205    370      t
18    307    251    191    251      h
19    467    181    169    183      a
20    237    220    217    326      t
Type: Heterodimer
Binding TFs: Q4H2X8 (Homeobox domain, Pou domain - N-terminal to homeobox domain)
Q4H2X8
			
	
			


			

				

				
				
				
				

			

			

		

	
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