DNA Binding Motif

						

			
Accessions: UN0409.2 (JASPAR 2024)

			
Names: RKD2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: GaCkyTTCrtCTTCC
Weblogo: 
PSSM: P0      A      C      G      T
01    184      2    797     17      G
02    610    135     65    191      a
03      0    995      0      5      C
04      3    194    453    349      k
05    129    264    201    405      y
06     15     17      0    968      T
07     15     51      0    934      T
08     22    763    148     66      C
09    528     68    397      7      r
10    240    111    244    405      t
11    181    687     31    102      C
12      0      0     15    985      T
13     70    165     15    750      T
14     19    952      9     20      C
15     20    726      7    247      C
Type: Heterodimer
Binding TFs: Q9CA66 (RWP-RK domain)
Q9CA66
			
	
			


			

				

				
				
				
				

			

			

		

	
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