DNA Binding Motif

						

			
Accessions: PRDM1_full (HumanTF 1.0)

			
Names: PRDM1
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric or dimeric; SELEX cycle: 2
Length: 15
Consensus: wrAAAGTGAAAGTgr
Weblogo: 
PSSM: P0      A      C      G      T
01    807    394    407    693      w
02    879     50   1552     54      r
03   2061    133     75    143      A
04   2120     32    111     66      A
05   2148     18     29      6      A
06     45     32   2890     56      G
07     43    324    365   1789      T
08     61      1   2912      1      G
09   2161     15      9      4      A
10   2094      9    187      2      A
11   2202     13     18      8      A
12     15     10   2953     11      G
13      9    108     99   1937      T
14    560    268   1481    759      g
15    740    540    648    451      r
Binding TFs: PRDM1_full (Zinc finger, C2H2 type, SET domain, Zinc-finger double domain, C2H2-type zinc finger)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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