DNA Binding Motif

						

			
Accessions: MA2144.1 (JASPAR 2024)

			
Names: nhr-5
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 9
Consensus: araGTACAc
Weblogo: 
PSSM: P0      A      C      G      T
01    578    140    140    140      a
02    627     40    292     40      r
03    629    116     20    233      a
04      0      0    999      0      G
05     90      0      0    909      T
06    729      0    173     96      A
07      0    999      0      0      C
08    721     24    229     24      A
09    109    581    199    109      c
Binding TFs: Q9NA51
			
Publications: Fuxman Bass JI, Pons C, Kozlowski L, Reece-Hoyes JS, Shrestha S, Holdorf AD, Mori A, Myers CL, Walhout AJ. A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions 12:884 (Mol). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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