DNA Binding Motif

						

			
Accessions: PAX6_DBD (HumanTF 1.0)

			
Names: PAX6
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 19
Consensus: tTwCACGCwTGAmTGmryw
Weblogo: 
PSSM: P0      A      C      G      T
01    289    166    354    887      t
02    134    102     77   1024      T
03    396     28     79    930      w
04     40    927     21    327      C
05   1044    206     45     16      A
06      0   1411      2    122      C
07     13      0   1363      1      G
08      1   1410     99      0      C
09    617     65      3    447      w
10      9     63      0   1101      T
11      3    359   1334      7      G
12   1015      0    220      0      A
13    336    440    281    173      m
14      7     84      7   1054      T
15    168      2   1238     75      G
16    574    586    148      1      m
17    486    111    357    214      r
18     26    829      8    438      y
19    457    217     66    374      w
Binding TFs: PAX6_DBD (Homeobox domain, 'Paired box' domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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