DNA Binding Motif

						

			
Accessions: GCM1_FOXI1_2_3 (HumanTF2 1.0)

			
Names: GCM1_FOXI1
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: ryGTMAATAvGGGyr
Weblogo: 
PSSM: P0      A      C      G      T
01    571    295    567    359      r
02    268    534    428    563      y
03    615    133   1792     31      G
04    268     73    248   1792      T
05   1323    469     17     24      M
06   1792     93     93     40      A
07   1792      0     34      0      A
08      0     61      1   1792      T
09   1792      0    132      2      A
10    618    476    499    199      v
11    216    105   1792    379      G
12      3      6   1792      7      G
13     28     26   1792     28      G
14    137    882    136    910      y
15    921    321    871    447      r
Type: Heterodimer
Binding TFs: FOXI1_TF2 (Fork head domain)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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