DNA Binding Motif
| Accessions: | UP00383A_1 (UniPROBE 20160601) |
| Names: | hlh-24, REF-1 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | wmawgGCACGTGycwwa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.35 0.14 0.15 0.37 w 02 0.27 0.31 0.22 0.20 m 03 0.51 0.18 0.11 0.20 a 04 0.34 0.22 0.16 0.28 w 05 0.23 0.03 0.68 0.07 g 06 0.22 0.08 0.69 0.02 G 07 0.01 0.98 0.01 0.01 C 08 0.96 0.01 0.03 0.01 A 09 0.01 0.97 0.01 0.02 C 10 0.01 0.01 0.97 0.01 G 11 0.01 0.02 0.01 0.96 T 12 0.01 0.01 0.98 0.01 G 13 0.01 0.45 0.09 0.45 y 14 0.21 0.47 0.10 0.21 c 15 0.30 0.19 0.17 0.34 w 16 0.34 0.07 0.20 0.38 w 17 0.50 0.13 0.15 0.22 a |
| Binding TFs: | UP00383A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AAAAAATA AAATAAAA AACACGTG ACACGTGC ACACGTGG ACACGTGT ACCACGTG AGCACGTG CACACGTG CACGTGCA CACGTGCC CACGTGCG CACGTGGA CACGTGGC CACGTGTA CACGTGTC CCACGTGC CCACGTGG GCACGTGC ATAAAAAT |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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