DNA Binding Motif

						

			
Accessions: VDR_HUMAN.H10MO.B|M01595 (HOCOMOCO 10)

			
Names: VDR
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Thyroid hormone receptor-related factors (NR1){2.1.2}; Vitamin D receptor (NR1I){2.1.2.4}
Length: 16
Consensus: rrGGtCAswGrGktca
Weblogo: 
PSSM: P0      A      C      G      T
01    193     34    217     56      r
02    226      5    257     12      r
03     66      3    409     22      G
04     15     10    414     61      G
05     40     37    115    308      t
06     16    360     87     37      C
07    405     11     39     45      A
08     74    164    180     82      s
09    140     88    113    159      w
10    106     31    349     14      G
11    266      9    212     13      r
12     27      6    445     22      G
13     23     17    229    231      k
14     65     43    117    275      t
15     17    290    116     77      c
16    338     38     89     35      a
Binding TFs: VDR_HUMAN (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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